YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88178272, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVKQLLPAL VAIGSAAAQS ATCTVSTTTI NGQAEATKLA GCGTVKGTVV LGSQGGATVE  60
   61 LSGPKEITGN LIVENNGMLE TFSSPSLQKI GGTFRLQNVT FLTSLQFPKL TEAQSIEWGS 120
  121 VTRLDSVTLG PLDKADNVRV SDTFLDNLDA FSLTTVKKLT LDNNRRLSKY TSQLTSLSDR 180
  181 LVIQANGLEL EVDLSSLKWI NDMEIANVTK FSVPALQVVN GSALFDSNRF PTFSAPNLTH 240
  241 TEKGDISFVG NGFLKNMTFP KLTDIAGGLL IANNTGLDEV TFFPKLRKVS GAVKLRGNFT 300
  301 TVDFPSLDNV KGAFDVSSTA NIRKSCDKLG EKAPRSQGGD GSIEGVFTCT ADNENANEDT 360
  361 DGSTSNSGNV DGTDGSDENG ASGPVFNAAL FGLVAVAGLA SAL

Type	Start	End	Confidence
Signal Peptide	1	20	0.96
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	403	0.99