YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116197643, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARSVTATTN GASKRREPAN GKANRQVNGS ANGAAPEAEA QVDDASYRDF FWTYTEEPHR  60
   61 TRRLAIIKAH PEVTKLCGPE PLTKYVVAGV VGLQILLAHL LRDTSFWSWK FWAVAYVFGA 120
  121 TSNQNLFLAI HEISHNLAFR SPMANRLFAI FANLPIAVPY SASFRPYHLT HHKSLGVDGL 180
  181 DTDLPTAFEA VFLDSILGKA FFCTFQIFFY ALRPMTVYRV PFTWVHGLNV AVQLGFDYAL 240
  241 ACLLPGYFTF NSVLYLLLSS FLAGSLHPTA GHFIAEHYVY EKIMPEARQP SNNIPVPETF 300
  301 SYYGPLNLVT YNVGLHNEHH DFPAIPWTRL PVLREMAKEF YADLPQHRSW TYVLWRFIFD 360
  361 EEIGMRCRVK RKQGGRVVGG GTVKAKVADW KEDEIEA

Type	Start	End	Confidence
Cytoplasmic	1	81	0.95
Transmembrane Helix	82	101	0.82
Non-Cytoplasmic	102	108	0.77
Transmembrane Helix	109	130	0.82
Cytoplasmic	131	143	0.82
Transmembrane Helix	144	164	0.84
Non-Cytoplasmic	165	189	0.85
Transmembrane Helix	190	212	0.82
Cytoplasmic	213	221	0.78
Transmembrane Helix	222	247	0.73
Non-Cytoplasmic	248	252	0.58
Transmembrane Helix	253	274	0.72
Cytoplasmic	275	397	0.84