YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|242231327, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSRNLIDSF NYAIEGILHA FKTQRNMKVH FAIAILVLFF CLFFDLSRVE FVVILFTISL  60
   61 VLISEMINTA IETTIDMMVK NYNPLAKVAK NVAAGAVLIS AINAILVAYL IFFDRVNPWT 120
  121 KIILLKLRES PIHITVINLL VVVFLTVILK VHFKEGTPMR GGMPSAHSAI AFATATAITF 180
  181 MTANAFIATL GFLLALMVAE SRVEGKIHSF SQVFFGGLFG ILITVLIFQI IK

Type	Start	End	Confidence
Cytoplasmic	1	26	0.85
Transmembrane Helix	27	46	0.90
Non-Cytoplasmic	47	51	0.63
Transmembrane Helix	52	71	0.79
Cytoplasmic	72	91	0.59
Transmembrane Helix	92	113	0.95
Non-Cytoplasmic	114	131	0.64
Transmembrane Helix	132	153	0.92
Cytoplasmic	154	168	0.62
Transmembrane Helix	169	196	0.84
Non-Cytoplasmic	197	208	0.58
Transmembrane Helix	209	231	0.90
Cytoplasmic	232	232	0.66