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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|116202257, gi...
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.42
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLPASSPD LFASLDGGLD AFDMGDGALG DSSIVDSSGP AATSANAAAS IVAETPISAA  60
   61 DAGGRSGTLS NSPPDVTAPS QQQQQPDLFS PVTASQWAFQ DTPPYESPIS DGNSFGIAPQ 120
  121 QTWDLPLNLG QLPQQSFYLQ STTAPAHDPT SASAPAVDNL PLASAFAPNL QPRQPEPLRT 180
  181 IENTLTPAQR ERLKTIAMPP HLQYRSPQSG AGSPDSASSG HDKGSLSSPD GAGQSKGYGR 240
  241 KRKSSAEVDE DDDDDDLEQP VKRTAHNMIE KRAPGDEDTT EDREELHGLT PAHKLNKATI 300
  301 LSKATEYIRH LEKRNNRLFE ENNTMHERIS AFEKLFMAGA LTSGLPNPLQ QPPTPIQYAQ 360
  361 DAGNFLNTPM ATPQSSDPPG MIPIPDNMKR ILAAQHLNAG RPYPVPSAAI CSWWVLLAGL 420
  421 MLVCVVLIDD TDDTGYTDAR GLNFLVKQLG PFLRAPIFTV GGFDASIVVM LAKLNQLFFL 480
  481 GAFLWAAFSS FFDLSVFRPS KKSTSTAADV KAVPSLASPI HVRRQAWLTA IQTVWVPRHN 540
  541 FFLEAAALLV KTMKYTLRNV VGSHGYLALT GLSAEEETAR VKAWSIALDA QLAGGDVEIN 600
  601 KSRLTLTLIA SGTLPDTPLR LMLKALHIRV LLWRLNGATW AANLIAAKLA RMKWNEARQL 660
  661 NRILNSLPEG ESSLDNALPE HLAALLEEDC DEVLSDVIIQ RAHNLAWNQE TTHNLVDKID 720
  721 GMDTVVEDPA VRSPMDAVAS WYSNATLHRV LFSSLQPHPE DPAAPGLADG IALAVRVAPI 780
  781 GSNAQVRALI ARAVLADGKR GAHIVSALQA LGPSANPDKH PDYRSGVPPL IDSPMTSIVP 840
  841 DPDAQMALRC AMGIAQLQKF EDPPAAAYLT IDSVLPAAAA VADLSLLGFT AAFHLMDRLN 900
  901 HHAVAREACA HSLERLAGNL RIWMGCDSAA GQKAGVDAAL RADMIGRCLA VTKSVVGMEA 960
  961 DPGYGSMDEE CVADAEGGGC 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle