YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88177449, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVADTLIYHP AVSHYLKFVA TTVGRDKLLR TLQYFARFYA WYLLRTNKTQ ASIQPWETMK  60
   61 KQFGLIRKVL RAGKNVEHFK AAAVAADASK TADPVLRYTA VGRQLGYAGY LTMDLGTVLD 120
  121 ATGIRKSPRA KRLQQEAYRF WAFGIACSVI AQMYTLRQLR LREATVDRKE GEGVLEGKRI 180
  181 AMERAASRLQ LTSDLCDLTV PLSALSWVHF DDGIVGLAGT LSSLIGVYLQ WKKTA

Type	Start	End	Confidence
Cytoplasmic	1	136	0.85
Transmembrane Helix	137	156	0.88
Non-Cytoplasmic	157	212	0.87
Transmembrane Helix	213	231	0.75
Cytoplasmic	232	235	0.76