YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|241902671, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGTIVNSIA IIVGGTIGTL LKVGIPERFK NIVMQGVALS VMIIGISSGL QFNNLMVVIV  60
   61 SLVIGGIIGE ALNIEEYLNK LGDTFQKKLS KDNSSTISKG FVTASLVYCI GAMAIVGALK 120
  121 DGLSGDHSIL FAKSVLDGIS SIIFASTFGL GVVFSAISVF LYQGSISLGA SFLQGLLTKP 180
  181 VIDDMTAVGG VLIFAISLNM LEIKNIKVGN LLPAIFIPIF YQILLNIIKG F

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.78
Transmembrane Helix	5	25	0.80
Cytoplasmic	26	33	0.72
Transmembrane Helix	34	68	0.74
Non-Cytoplasmic	69	99	0.47
Transmembrane Helix	100	119	0.90
Cytoplasmic	120	138	0.42
Transmembrane Helix	139	162	0.88
Non-Cytoplasmic	163	180	0.45
Transmembrane Helix	181	201	0.81
Cytoplasmic	202	207	0.51
Transmembrane Helix	208	228	0.84
Non-Cytoplasmic	229	231	0.50