YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|242230699, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	41	0.94
Non-Cytoplasmic	42	74	0.89
Transmembrane Helix	75	96	0.90
Cytoplasmic	97	105	0.74
Transmembrane Helix	106	126	0.92
Non-Cytoplasmic	127	139	0.77
Transmembrane Helix	140	161	0.93
Cytoplasmic	162	169	0.82
Transmembrane Helix	170	193	0.84
Non-Cytoplasmic	194	211	0.75
Transmembrane Helix	212	233	0.79
Cytoplasmic	234	259	0.60
Transmembrane Helix	260	286	0.81
Non-Cytoplasmic	287	300	0.52
Transmembrane Helix	301	320	0.73
Cytoplasmic	321	323	0.38
Transmembrane Helix	324	348	0.85
Non-Cytoplasmic	349	354	0.40

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQSYIYTVP DSYNKYIKRK ILIIFLTALA TLVLAVYAIN AGSAGISTYD VIKTLLGKGE  60
   61 ERFRIIVWNI RMPRVLTAIV AGIGLSVAGC VTQSILRNPL ASPFTLGISQ GAAFGAAVAI 120
  121 IVFGAGSTAN SDSVIINNPY LVVFFAFLGS MGSTIVVLML AKSFRVTPEA MVLAGVALGS 180
  181 LFSAVTMILQ YFADDVKVAS VVFWTFGDIG RASWKDLGIM SVVVGISLIY FMFNRWNYNA 240
  241 LDSGEETAKG LGVDVERVRL LGMFVSSLIA AVITSFVGII GFIGLVGPHI MRRLIGGDHR 300
  301 FLIPASSVMG GLILLASDTL GRTIISPVVL PVGAITSFLG APIFLYVLSR GYKR