YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GET1_CHAGB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSLLVVVFV IELVVQLVNT IGATTINNLI WRAYLSIPTS LAKQFTEQRQ KQKEYLAVRL  60
   61 ELNATSSQDE FAKWAKLRRQ HDKLLDELEK KKSAVEASRT KFDRYITAVR FISTRGVQWL 120
  121 LPMWYGKLPM FWLPYGWFPY YVEWFVSFPR APLGSVSIVT WQAACTAILT LVMNAVVGIL 180
  181 AFISASRQSG KQKQKQPVPA AGARNGETKK EL

Type	Start	End	Confidence
Cytoplasmic	1	119	0.82
Transmembrane Helix	120	138	0.80
Non-Cytoplasmic	139	159	0.83
Transmembrane Helix	160	183	0.92
Cytoplasmic	184	212	0.94