YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88176380, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	132	0.94
Transmembrane Helix	133	151	0.80
Non-Cytoplasmic	152	168	0.82
Transmembrane Helix	169	191	0.90
Cytoplasmic	192	211	0.92
Transmembrane Helix	212	231	0.86
Non-Cytoplasmic	232	238	0.81
Transmembrane Helix	239	261	0.82
Cytoplasmic	262	267	0.94
Transmembrane Helix	268	289	0.88
Non-Cytoplasmic	290	294	0.75
Transmembrane Helix	295	314	0.93
Cytoplasmic	315	339	0.92
Transmembrane Helix	340	359	0.95
Non-Cytoplasmic	360	400	0.93
Transmembrane Helix	401	425	0.79
Cytoplasmic	426	441	0.62
Transmembrane Helix	442	460	0.66
Non-Cytoplasmic	461	584	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPHSTSHSTG SHMRAASQTR SSTNKSFGES HGGPGQGETE KFPDFDAGQT LPGGQPSGQR  60
   61 WQQNGLTPGN GDASHAGRWH ARRDSRVRWA PPDATSGFSG HSKKARISST VHRMRSASMS 120
  121 QNAQEIAGAL RAPVSWKLIG LCVMWYWSSA LTNTSSKTIL TAFDKPATLT LVQFAFVSSY 180
  181 CMLFSWLAST FPRLRDAVPA LRHPIRAPSR DVIRTTLPLA AFQIGGHLLS SNATSKIPVS 240
  241 LVHTIKGLSP LFTVLAYRFI FDIRYPKATY LSLIPLTCGV MLACSGKHGF GGQFLGILYA 300
  301 LLAAMIFVTQ NIFSKRLFNE AARAEQEGPN HQSRKLDKLN LLCYSSGMAF LLTGPIWLWS 360
  361 EGVDIIGDFL WDGSVDLIQS PNSLDHGPLV LEYIFNGTFH FGQNILAFVL LSMVSPVTYS 420
  421 VASLIKRVFV IIIAIIWFRS PTTRIQAVGI GLTFLGLYLY DRSSEKNKAD QRARSMTETR 480
  481 REATLLPLST KHVLPTGPGG QVGPPFFESP VGMGDPAVGH AYTHGSAAAA AFASSSVMTD 540
  541 TKKSDDAGGR GGRNRGMSNA AWRPPGTRQE DTWRTGDSPK AAAR