YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116204633, gi...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPRINIPPV TRIVLIVLGL QSVLSAAIRY RQWTANSEIV IPYLNLIPQL SLVYPWTFLT  60
   61 TTLVESNVFT LSIACVTLYN GGRYLERAWS SREFAKFLLV TAVVPNALCF GTSILFFALT 120
  121 RNERWTLMTI AGTIPLQISF LVAFSQLVPA HTVTLFRGLL SLRVPRFPLL YIGLVTALCL 180
  181 TPMLTAASFL LAVYGFFVSW TYLRFYKVAF PDLDTSQPSS LRGDASDTFA IAEFFPSPVR 240
  241 PIIATISEQV FNMLVAMRLC VPFSQADISA ARGDHHHTFT NRGAPGSARA EAERRRALAL 300
  301 RALDQRLHAA TATAAARAQS APVPPAVAPP IPSATGPTVQ SQPQAPPPNA MTAQATGGSG 360
  361 MLGETNYNPD ADADRNEP

Type	Start	End	Confidence
Cytoplasmic	1	9	0.78
Transmembrane Helix	10	30	0.80
Non-Cytoplasmic	31	55	0.84
Transmembrane Helix	56	79	0.83
Cytoplasmic	80	96	0.83
Transmembrane Helix	97	119	0.94
Non-Cytoplasmic	120	129	0.79
Transmembrane Helix	130	155	0.76
Cytoplasmic	156	168	0.80
Transmembrane Helix	169	195	0.89
Non-Cytoplasmic	196	378	0.70