YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88175875, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	495	0.80
Transmembrane Helix	496	515	0.69
Non-Cytoplasmic	516	536	0.89
Transmembrane Helix	537	559	0.89
Cytoplasmic	560	577	0.85
Transmembrane Helix	578	597	0.95
Non-Cytoplasmic	598	621	0.81
Transmembrane Helix	622	645	0.88
Cytoplasmic	646	669	0.89
Transmembrane Helix	670	693	0.73
Non-Cytoplasmic	694	739	0.83
Transmembrane Helix	740	764	0.71
Cytoplasmic	765	1232	0.80
Transmembrane Helix	1233	1253	0.79
Non-Cytoplasmic	1254	1290	0.72
Transmembrane Helix	1291	1312	0.86
Cytoplasmic	1313	1329	0.70
Transmembrane Helix	1330	1348	0.67
Non-Cytoplasmic	1349	1367	0.60
Transmembrane Helix	1368	1402	0.57
Cytoplasmic	1403	1403	0.28
Transmembrane Helix	1404	1426	0.78
Non-Cytoplasmic	1427	1496	0.60
Transmembrane Helix	1497	1519	0.88
Cytoplasmic	1520	1535	0.50
Transmembrane Helix	1536	1568	0.73
Non-Cytoplasmic	1569	1574	0.47
Transmembrane Helix	1575	1600	0.81
Cytoplasmic	1601	1605	0.38
Transmembrane Helix	1606	1628	0.68
Non-Cytoplasmic	1629	1678	0.66
Transmembrane Helix	1679	1698	0.81
Cytoplasmic	1699	1734	0.85
Transmembrane Helix	1735	1757	0.92
Non-Cytoplasmic	1758	1825	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGYQQGQGQ AHGQGHHDYD DGYGQQGNTD SYYQDDQHYY DNNGQNNRGA QQQGDGYYDE  60
   61 SGYYNADPNN PYHQDGGYYD NHDQYQDDYY NNGNNAGYYD QGYDRGAHGN GQGQRNGSEE 120
  121 DSETFSDFTM RSDMARAAEM DYYGRGDERY DGYNDGQGGG RGYRPPSSQI SYGGNRSSGA 180
  181 STPNYGMDYG NVLPAGQRSR EPYPAWTSEA QIPLSKEEIE DIFLDLTAKF GFQRDSMRNM 240
  241 YDHLMTLLDS RASRMTPNQA LLSLHADYIG GDNANYRKWY FAAHLDLDDA VGFANIKGKG 300
  301 GKRKNKKKNG EAENEAEALE DLEGDDSLEA AEYRWKTRMN RMSQHDRVRQ VALYLLCWGE 360
  361 ANQVRFMPEC LCFIFKCADD YLNSPACQNM VEPVEEFTFL NNVITPLYQY CRDQGYEISG 420
  421 GVYVRRERDH NQIIGYDDCN QLFWYPEGIE RIVLQDKSKL VDVPPAERYL KLKDVEWKKV 480
  481 FFKTYKETRS WFHMLVNFNR IWILHLTMFW FYTSFNSPTL ITPNYEQQVD NPPPRAAHWS 540
  541 LVGFGGTIAA LIQVLATLAE WMYVPRRWAG AQHLTKRLLF LLLVLALNVG PGVYVFMPAG 600
  601 NQEAYLEKQN GQIALILGIT QFFIALITFL FFSIMPLGGL FGSYLTKNSR RYVASQTFTA 660
  661 SYPRLRGNDM ALSFGMWAVI FGIKFGESYL FLALSIRDPI RFLNIMDVSS CIGDTIVERY 720
  721 LCQYQPQITM GLMIFTDLIF FFLDTYLMYV VVNACISVAR SFYLGSSILT PWRNVFSRLP 780
  781 KRMYSKILAT TDMAIKYKPK VLISQIWNAI VISMYREHLL AIDHVQKLLY HQVPSEQEGK 840
  841 RTLRAPTFFV SQEDHSFKTE YFPSYSEAER RISFFAQSLS TPIPEPLPVD NMPTFTVMIP 900
  901 HYSEKILLSL REIIREDEPY SRVTLLEYLK QLHPHEWDCF VKDTKILADE TSQFNGEEEK 960
  961 EEKGTAKSKI DDLPFYCIGF KSSAPEYTLR TRIWASLRFQ TLYRTISGFM NYSRAIKLLY1020
 1021 RVENPEVVQM FGGNSDKLER ELERMARRKF KLVVSMQRYS KFKKEEMENA EFLLRAYPDL1080
 1081 QIAYLDEEPP LNEGEEPRLY SALIDGHSEL MENGMRRPKT LAQVGGKLHY GHPDFLNGIF1140
 1141 MTTRGGVSKA QKGLHLNEDI YAGMNALLRG GRIKHCEYYQ CGKGRDLGFG SILNFTTKIG1200
 1201 TGMGEQMLSR EYYYLGTQLP LDRFLSFYYA HPGFHVNNMF IMLSVQLFMV SMLQIGALRR1260
 1261 ETIPCEYNPD VPITDPLFPT GCANTDALMD WVYRCILSIF FVYFISFVPL IVQELSERGP1320
 1321 LRAATRFAKH LGSLSPFFEV FVCQIYATSV SQDITFGGAR YIGTGRGFAT ARIPFGVLYS1380
 1381 RFAGPSIYFG ARTLLMLLFA TVTIWQGALV YFWVSLVALV VSPFLYNPHQ FSWTDFFIDY1440
 1441 RDYLRWLSRG NSRSHASSWI AFCRLSRTRI TGYKRKALGD PSSKGSSDVS RAAITNLFWA1500
 1501 EIMAPLLLVA VTLIPYLFIN AQTGVRKSET KPTASLLRVA IVAFAPIGVN AGALAFFFAM1560
 1561 ACCMGPVLSM CCKKFGSVLA AIAHAIAVIV FLVMFEVMFV LQSFDFPSTL LGMITSIAIQ1620
 1621 RFIFKLIISL TLTREFKTDQ SNIAFWTGKW YSMGWHSMSQ PAREYLCKIT ELCMFGGDFV1680
 1681 LGHIILFLMA PIILVPQIDK LHSIMLFWLR PSRQIRPPIY SMKQTKLRRR RVVRYAILYF1740
 1741 VLLVVFLALI VGPVVAGKHI TLPDSLLKPL NDAALVQPTG LDHDNTRGKT PTGTGSPGYS1800
 1801 GIWTSTAESS RATATSGSDK RAMYI