YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|166853488, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKNRLFKKL FISNMIIILI TLSILSGMFY LMFQNYYFAD KEKIMLEEAQ EINAILNEFA  60
   61 VGDINIDKWN QELNVVTRLI NATVWIVDKE GLIYSQSQQQ GKAWTGVSLS KEEIKSILDG 120
  121 QSVVKKGYFG GKFNQPVLTV GVPLVINGRI EGAIFMHAPL TEMNKTIINI FILMLLSGGV 180
  181 ALIIGFVLIS YTSSKISQPL KEMSLAVQQV AKGNFSARVQ HKEEDEIGDL AKSFNIMAKE 240
  241 LEQLENMRKD FVANVSHELR SPLTSIQGYI DGILDGTIPK EKACDYLKIV QKETRRMSRL 300
  301 IDDFLEMTKL ESGQFPLHKT EFDINELIRL AVIKFEKRIV EKDLTVKVDF EEDRRIVIGD 360
  361 KDKIEQVLTN LIDNAIKFSK EKGIIHIFTE IKDDKVFITI KDNGIGISPE DQEHIWDRFY 420
  421 KADKSRGKDG AGLGLYIVKR IINAHNEEIW VESEVGKGTA FTFTLSVKKF

Type	Start	End	Confidence
Cytoplasmic	1	9	0.93
Transmembrane Helix	10	31	0.93
Non-Cytoplasmic	32	136	0.92
Transmembrane Helix	137	158	0.74
Cytoplasmic	159	166	0.82
Transmembrane Helix	167	189	0.93
Non-Cytoplasmic	190	470	0.91