YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|167040956, gi...
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKVGDKSYK FFLGLLKTYK NNIIAFVVAL SIGLSFIVYE EGFAYKITVD GETIGITKNI  60
   61 DEVKSFIEEL HKKEKQKTGT DIVLNQQIKF ERVRVSNKEL TDVHKIYANL ENAMSFSCKA 120
  121 AAIIVDGKFV TALKNEEEAN KVLEMLKNKY ARDSDRTYFK EDVKIEEKYI PPKYLVSFEE 180
  181 ALKILQQPVK KAVTYTVKEN DSLWSIARAH DMYIDDILKL NPGLTENLKP GQVIYLSSAV 240
  241 PNVTVVTEKR IVYKEKIPFE TKLTKDDKLY TNQSKVLVEG KKGLKEVTAV VVSYNGVEVS 300
  301 KEVKSENILE KPINKIVAVG SRRISYVATG SFNYPARGTI TSRFGQRWGR FHTGVDIAAP 360
  361 QGSPIYAADG GTVIFSGWES GYGYLVKIDH HNGYVTYYGH ASKLLVKKGD KVAKGQKIAL 420
  421 VGSTGRATGP HLHFEVRKNG VPIDPMPFLN RR

Type	Start	End	Confidence
Cytoplasmic	1	20	0.66
Transmembrane Helix	21	39	0.71
Non-Cytoplasmic	40	452	0.98