YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116200624, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADTVQTTAA EKDIAQTTGA ATHNGVNPAV VHRGYDPRNP MANIHADDQA RLPAFGGEFQ  60
   61 PGLYRSVEAR KFANPAPLGL SAFALTTFVL SAVNMNARDL TAPNIAVPLA FGYGGLVQLL 120
  121 AGMWEMAVGN TFGATALSSY GGFWIAYAIL LTPNWNIVGP GGPYIPLDDQ GNPVSNMADS 180
  181 ALGLFLTGWF IFTTILLLCT LRSTVMFFML FFTLDLAFLM LACGHYAKDN GVADVAKRLT 240
  241 QAGGGFGMLA AFLAWYNAFA GIADSSNSFF LIPVFHFPWS EKGREARLAK TNSHTAAA

Type	Start	End	Confidence
Cytoplasmic	1	71	0.99
Transmembrane Helix	72	93	0.88
Non-Cytoplasmic	94	101	0.75
Transmembrane Helix	102	122	0.87
Cytoplasmic	123	130	0.67
Transmembrane Helix	131	151	0.86
Non-Cytoplasmic	152	179	0.84
Transmembrane Helix	180	199	0.92
Cytoplasmic	200	206	0.70
Transmembrane Helix	207	227	0.89
Non-Cytoplasmic	228	251	0.75
Transmembrane Helix	252	277	0.68
Cytoplasmic	278	298	0.92