YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109897665, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPESKRKGIY LLPNLLTTAG LFSGFYAVVA SMNGHFEAAA VAIFIAMIFD GLDGRVARMT  60
   61 NTQSEFGAEY DSMADMVSFG MAPALVAYNW GLSGLGKIGW LAAFIYVAGA ALRLARFNTQ 120
  121 IGIADKRYFQ GLASPAAAAL VAGLVWVGGE YDVNGDDYGV LVALVTSLAG LLMVSNFKYN 180
  181 SFKEVNWHGK VPFVALLLVM LIFVVVATEP ALVLFVVFAL YALAGPINTF RSVDKVKLEH 240
  241 VVGDADENDA DFTQGDEQSE STTDDDVEEP TNKQ

Type	Start	End	Confidence
Cytoplasmic	1	8	0.95
Transmembrane Helix	9	30	0.92
Non-Cytoplasmic	31	35	0.82
Transmembrane Helix	36	56	0.84
Cytoplasmic	57	71	0.81
Transmembrane Helix	72	91	0.86
Non-Cytoplasmic	92	97	0.75
Transmembrane Helix	98	117	0.93
Cytoplasmic	118	127	0.94
Transmembrane Helix	128	149	0.93
Non-Cytoplasmic	150	157	0.90
Transmembrane Helix	158	177	0.94
Cytoplasmic	178	186	0.81
Transmembrane Helix	187	207	0.81
Non-Cytoplasmic	208	210	0.50
Transmembrane Helix	211	230	0.74
Cytoplasmic	231	274	0.53