YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109701928, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAIFQLMAD SLIFFLGFVF IISLMIGSFL NVVIYRLPIM MERSWKADFH AHFDTDTALE  60
   61 NTPSKAPTEP ANFNLVKPDS TCPNCQHKIR AWENIPVLSW LLLRGKCSQC QNAISVRYPL 120
  121 VELGTAFCSV WIAWHFGYSW SALAAVVLTW VLVALIFIDI DTMLLPDQLT LPLLWMGLLF 180
  181 SIINPDVTPT DSIIGATTGY LSLWSVYWAF KLLTGKEGMG YGDFKLLAAL GAWLGWQYLP 240
  241 IVILMSSLVG AVIGISILTI QGKDKGQAIP FGPYLAIAGW LTLLYGDWIS DYYWQWVGIR 300
  301

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.92
Transmembrane Helix	12	35	0.92
Cytoplasmic	36	135	0.83
Transmembrane Helix	136	158	0.84
Non-Cytoplasmic	159	163	0.38
Transmembrane Helix	164	188	0.66
Cytoplasmic	189	191	0.37
Transmembrane Helix	192	210	0.65
Non-Cytoplasmic	211	235	0.73
Transmembrane Helix	236	260	0.87
Cytoplasmic	261	268	0.77
Transmembrane Helix	269	289	0.89
Non-Cytoplasmic	290	300	0.84