YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109897880, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.87
Transmembrane Helix	21	44	0.91
Non-Cytoplasmic	45	55	0.78
Transmembrane Helix	56	75	0.86
Cytoplasmic	76	81	0.71
Transmembrane Helix	82	102	0.95
Non-Cytoplasmic	103	120	0.72
Transmembrane Helix	121	135	0.56
Cytoplasmic	136	142	0.39
Transmembrane Helix	143	162	0.87
Non-Cytoplasmic	163	165	0.32
Transmembrane Helix	166	185	0.56
Cytoplasmic	186	186	0.16
Transmembrane Helix	187	209	0.74
Non-Cytoplasmic	210	277	0.74
Transmembrane Helix	278	300	0.91
Cytoplasmic	301	310	0.88
Transmembrane Helix	311	335	0.80
Non-Cytoplasmic	336	343	0.74
Transmembrane Helix	344	366	0.89
Cytoplasmic	367	374	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMMLRTKLD PNKRSLLNRI HCDGPLLIGL LVLMAVGLVT IYSAGGQDWQ LIDRQLIRLG  60
   61 LALGVMLAVA QIPPLAYQKL SIYFYILGIA MLVAVIVFGH VGKGAQRWLD LGVVRFQPSE 120
  121 IMKLAVPMMV AWYISQFNLP PKLRHILFGF ILVGVPTLLI AQQPDLGTSL LIASSGIFAL 180
  181 FLAGMSWRFI GGIALAVSIF SPIMWNFLMK DYQKQRVLTF LNPESDPLGS GYHIIQSQIA 240
  241 IGSGGAEGKG WLQGTQSQLE FLPERHTDFI FAVFSEEFGF WGVVGLLAIY TFIVIRGMII 300
  301 ANRAQDAFSK LLAGSITLTF FVYVFVNMGM VSGILPVVGV PLPLVSYGGT SMVTLLAGFG 360
  361 ILMAIATQKR LLSR