YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109702302, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAMQFLVNT LFELYLMVVL LRFWLQLARA DFYNPFSQFV VKATHPIVGP LRRVLPSIGR  60
   61 MDTATLVLAL LVAGLKIVVL NLIAGNTNIN PLGLVIGSFY LVVKEALSLM MWVLIIRAIM 120
  121 SWVSQGYNPM DMVLGQLTEP LLAPIRRRLP NLGGLDLSVM VVILVIIFLQ KLLGDVFGYF 180
  181

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.53
Transmembrane Helix	6	25	0.71
Cytoplasmic	26	62	0.75
Transmembrane Helix	63	84	0.89
Non-Cytoplasmic	85	93	0.76
Transmembrane Helix	94	116	0.81
Cytoplasmic	117	151	0.85
Transmembrane Helix	152	173	0.90
Non-Cytoplasmic	174	180	0.89