YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76590290, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.87
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	16	0.87
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	30	0.97
Transmembrane Helix	31	51	0.93
Cytoplasmic	52	69	0.93
Transmembrane Helix	70	92	0.92
Non-Cytoplasmic	93	123	0.95
Transmembrane Helix	124	143	0.94
Cytoplasmic	144	167	0.90
Transmembrane Helix	168	191	0.86
Non-Cytoplasmic	192	209	0.88
Transmembrane Helix	210	230	0.94
Cytoplasmic	231	241	0.83
Transmembrane Helix	242	264	0.91
Non-Cytoplasmic	265	298	0.91
Transmembrane Helix	299	317	0.92
Cytoplasmic	318	325	0.87
Transmembrane Helix	326	345	0.95
Non-Cytoplasmic	346	384	0.90
Transmembrane Helix	385	406	0.87
Cytoplasmic	407	425	0.85
Transmembrane Helix	426	445	0.95
Non-Cytoplasmic	446	452	0.69
Transmembrane Helix	453	474	0.90
Cytoplasmic	475	637	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVALLLFAL ISPEFADQTF SQVQSTIVDN GSWFYVLTVA SILMFVLYLA VSRHSQVKLG  60
   61 PDHSEPDYSF ISWLSMLFAA GMGIGLMFFG VAEPLMHFLA PPTAPPSTIE AAREAMKMTF 120
  121 FHWGLHAWAI YAVVALILAY FSYRHDLPLT LRSALYPIIG EKIYGWRGNV VDIFAVISTI 180
  181 FGVATSLGLG VTQISSGLNY LFGFPVSEGY QLLLISAITG LAIVSVVSGL DKGIRMLSEL 240
  241 NMLLAVGLLL FILLVGPTVF LLQAMLQNTG AYLSDLVRNT FNLFAYDKKD WLGGWTIFYW 300
  301 GWWLAWAPFV GVFIARISKG RTIREFLIGV LLIPSMFTLA WMTIFGNSAI ELVLNQGSTE 360
  361 LVKLATDNTP VALFLFLEHF PWSNVISGVA VLMIVVFFVT SCDSGAMVVD MLCSNGQNDT 420
  421 PVWQRIYWAG GVGLVAAILS MAGGLSALQT MTIASALPFA VILIIAMYGL IKALRVEEFK 480
  481 RASMTLHAPS GQINAGNDSW KERLQTIVDF PNKTTVERFV EQTVKQAFDS VAQELTLKHI 540
  541 EAEISQSTES VTLTVKHGED AEFIYAVYPT IHHMPEYSQS SDSQAEDSAD ENTYYRADVH 600
  601 LSEGGQNYDI MGWSKVAVIN DIIDQYHRHL HFLHLAG