YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FTSW_PSEA6
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.79
Transmembrane Helix	30	52	0.88
Non-Cytoplasmic	53	64	0.70
Transmembrane Helix	65	86	0.90
Cytoplasmic	87	95	0.66
Transmembrane Helix	96	116	0.92
Non-Cytoplasmic	117	127	0.64
Transmembrane Helix	128	147	0.66
Cytoplasmic	148	165	0.65
Transmembrane Helix	166	195	0.75
Non-Cytoplasmic	196	202	0.53
Transmembrane Helix	203	223	0.91
Cytoplasmic	224	237	0.58
Transmembrane Helix	238	254	0.56
Non-Cytoplasmic	255	290	0.79
Transmembrane Helix	291	308	0.95
Cytoplasmic	309	326	0.82
Transmembrane Helix	327	350	0.87
Non-Cytoplasmic	351	359	0.73
Transmembrane Helix	360	379	0.95
Cytoplasmic	380	487	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTSTFATPL RAMFAQRHDA APAVVRPYDV SLILLALSLM AIGLVIVTSA SMPVASRLFD  60
   61 NPFHFAIRHG IYIVLAIGAA LTVMQIPMQW WRTSNAWLLL LGLVLLIAVL LVGRSVNGST 120
  121 RWLAIGPITI QAAEPAKLFF FCYLAGYLVR RYEEVTENIK GFAKPLVVFF AFAVLLLLQP 180
  181 DLGTVVVMLC TTIGLLFLAG AKLWQFFGLA FTGGAAVTFL IMFEEYRMKR ITSFLDPWAD 240
  241 PFGSGYQLTQ SLMAYGRGDV FGQGLGNSLQ KLEYLPEAHT DFIMAILAEE LGFAGVLTVL 300
  301 ALMLCIVLKA MKMGSKALQN ERPFDAYLAY SIGIWFSFQT AVNVGASAGI LPTKGLTFPL 360
  361 LSYGGSSLII MAAAVGLLVR IDFEMRVEGI QAIDRSGKAK ASTSSSRKNK PKTASSAGKK 420
  421 KVSTVLDDVA YAVVDDVQDE EQDIDSIMDD FAQDESAQTV SHQTKRASKS TSKTPRGKDE 480
  481 EQEDGYV