YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58177053, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSDKIHHHH HHMIYYGTMF DHKVRFSIVR MREVVEEARN RHALSYLATV VLGRALIGAA  60
   61 LVTPWLAEKE RWTLDIEGNG PIRRVVAQST SEFTVRGYVA NPKVELPLNE KGKFDVAGAI 120
  121 GQGVLRVVRD LGLKTPFVSQ VPLVSGEIAE DLAYYFAVSE QIPSAFSIGV LVDSDGVKIA 180
  181 GGFAVQIIDR TLEQEKVEMI EKNIKNLPSI SKLFQEAEPL DVLERIFGEK VGFVETAEIK 240
  241 YKCDCNREKA KNALLVLDKK ELEDMRKEGK GEVVCKWCNT RYVFSEEELE ELLKFKVDDS 300
  301 GS

Type	Start	End	Confidence
Cytoplasmic	1	43	0.53
Transmembrane Helix	44	63	0.55
Non-Cytoplasmic	64	302	0.96