YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|87316726, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.89
Transmembrane Helix	9	27	0.90
Non-Cytoplasmic	28	34	0.76
Transmembrane Helix	35	56	0.88
Cytoplasmic	57	61	0.73
Transmembrane Helix	62	82	0.87
Non-Cytoplasmic	83	87	0.72
Transmembrane Helix	88	108	0.92
Cytoplasmic	109	114	0.77
Transmembrane Helix	115	137	0.85
Non-Cytoplasmic	138	161	0.93
Transmembrane Helix	162	182	0.94
Cytoplasmic	183	206	0.90
Transmembrane Helix	207	229	0.91
Non-Cytoplasmic	230	247	0.89
Transmembrane Helix	248	273	0.87
Cytoplasmic	274	283	0.87
Transmembrane Helix	284	307	0.80
Non-Cytoplasmic	308	847	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAILRNKAF WLFLVALFAL PALPGAARVP EYWITLLNYI GLYAIVAVGL VLLTGIGGMT  60
   61 SFGQAAFVGV GAYAAAFLTT AYGVSPWLGL IAGVVLTALV ALVLGVVTMR LSGHFLPLGT 120
  121 IAWGLALFFL FGNLDWLGKY DGINGIPALA LFGHAFDTGR SLYYLIWIVV LAAIVSVQNL 180
  181 LNSRPGRAIR ALRGGGMMAE AMGVNTGWLR VVIFVYAAVL ASISGFLYAH LQRAVNPTPF 240
  241 GLSHGIEFLF MAVVGGVAHV WGAVLGAAIV TVLQDYLQTL LPKLLGAEGN FEIIVFGVLM 300
  301 VLLLQYARQG VWPFVAKLMP REPAARAPGQ AAPLPRRARP QAGEALLVVD NVRKQFGGLV 360
  361 AVNDVSFDVL AGQIVGLIGP NGAGKSTTFN LVTGVLRPTS GAITFRGERI DKLVSREIVK 420
  421 RGIGRTFQHV KLLPGMTVLE NVAIGAHLRG SAGIWRSVVR LNAHEEARLM SEAARQLRRV 480
  481 GLDGHMYDEA GSLALGQQRI LEIARALCSD PTLLLLDEPA AGLRYQEKQQ LAELLRKLKA 540
  541 EGMSVLLVEH DMDFVMNLTR STGRDGVRYA DRRRLATGCA EGSGSAGSLS RWGGVMMDRE 600
  601 AKPVLAVQNL SVRYGKVEAL HRAALTVGAG QIVTVIGPNG AGKSTLLNAV MGALPTNGHA 660
  661 AGTVLYRGDD VDALPVEQRV ALGMCLVPEK RELFGTMSVE DNLVLGAYRR KMAGDASFLD 720
  721 QLEPVFSLFP RLKERRKQAA GTLSGGERQM LAVGRALMGK PDLLMLDEPS LGLAPLIVKE 780
  781 IFHIISALRG TGVATLLIEQ NARAALQISD YGYVLETSEI ALEGPAGELA QNPQVIETYL 840
  841 GLARKAV