YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76590943, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQVKKAVIP VAGLGTRMLP ATKAIPKEML PVVDKPLIQY VVSECVNAGI KEIILVTHAS  60
   61 KNSIENHFDT SFELEATLEK RVKRQLLEAV QAICPKDVTI MHVRQGVAKG LGHAVLCARP 120
  121 MVGDAPFAVV LPDVIVDEGT CNPKKDNLAD MTAKFNTSQV SQIMVESVPQ EDVSKYGIVD 180
  181 LDGAELSPGE SAKMHGMVEK PNLSDAPSDL AVVGRYVLSE KIWDLLAKTT PGAGDEIQLT 240
  241 DAIDSLMQTE QVDAYYMKGK SHDCGSKLGY MKANVEYAMR HPELGAEFNE FLQTLVK

Type	Start	End	Confidence
Signal Peptide	1	24	0.54
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	297	0.99