YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|69244471, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.90
Transmembrane Helix	16	37	0.90
Non-Cytoplasmic	38	56	0.84
Transmembrane Helix	57	77	0.89
Cytoplasmic	78	83	0.83
Transmembrane Helix	84	106	0.86
Non-Cytoplasmic	107	138	0.91
Transmembrane Helix	139	158	0.96
Cytoplasmic	159	178	0.89
Transmembrane Helix	179	200	0.93
Non-Cytoplasmic	201	219	0.85
Transmembrane Helix	220	240	0.59
Cytoplasmic	241	247	0.50
Transmembrane Helix	248	267	0.51
Non-Cytoplasmic	268	306	0.86
Transmembrane Helix	307	327	0.88
Cytoplasmic	328	339	0.79
Transmembrane Helix	340	360	0.85
Non-Cytoplasmic	361	368	0.60
Transmembrane Helix	369	389	0.85
Cytoplasmic	390	409	0.81
Transmembrane Helix	410	433	0.87
Non-Cytoplasmic	434	721	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIFSFEFW QKFGKALMVV VAVMPAAGLM ISIGKSIPLI NPDWTPLVTT GGVIENIGWA  60
   61 IIGNLHILFA LAIGGSWAKE RAGGAFAAGI SFILINRITG AIFGVTSDML ANEDAFTHTL 120
  121 FGTKIMVKGF FTSVLEAPAL NMGVFVGIIA GFVGAMAYNK YYNYRKLPDA LSFFNGKRFV 180
  181 PFVVILWSTI VALILAVVWP NVQAGINNFG LWIAESQESA PILAPFLFGT LERLLLPFGL 240
  241 HHMLTIPINY TQLGGSYEIL SGAQAGTQVF GQDPLWLAWA TDLVNLKGAG DMSQYEFVLH 300
  301 NWTPARFKVG QMIGSSGILM GMAFAMYRNV DPDKKARYKS MYFSAALAVF LTGVTEPLEF 360
  361 MFMFAAVPLY VIYSVIQGAA FAMADILPLR VHSFGNIELL TRTPLAIKAG LGGDLINFVL 420
  421 CVIAFGVVTY FLANFLIKKF NFATPGRNGN YDNDSEETVV SNSGTGTADQ QVVQIIHLLG 480
  481 GKENIKDVDA CMTRLRVSVN DREKVGTEEA WKRAGAMGLI VKDNGVQAVY GPKADVLKSD 540
  541 IEDLLQSGAE IPEPEMVSTG NGQAGSKQYL GIEQELVSAA SGEVIPLSEV KDPVFSQKMM 600
  601 GDGFAVIPTS REVVAPIAGK VTSIFPSKHA IGLETKDGIE VLIHMGIDTV QMNQPAFEIA 660
  661 VKEGQEVGTG TKLAEMDLDV IQNEEKDPTI MIVFTNDKVE EVVIKQLGTV TAGKVIGSIK 720
  721 M