YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|69244712, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKKEPKKL SHPSSDENNL TPWQKANRKY LAEQEMKNQE PKKEDITLDT PLSDSEEEKT  60
   61 VQEEQQEESQ SEKKIEFFEE IKQKKNGGPY NGSFLNRLPN LKSQRHKVLF RRLALIITVL 120
  121 GIPLIFLIYY VSPYSKLQAV AVSGNKTVNS QEIISDTKLS LGENVWGQYF HRSTYIDRLK 180
  181 KAQPRIETAN IHFKGMNEFD LDVTEYKEIA LIAKNNQYYP VIENGTVLDE KVANPTKNLP 240
  241 ILEEFKDSAK IKELTKQYNQ LSSELQKAIS EIKYTPRASN KNLIQLNMND GNQVIVNINN 300
  301 LANQMKYYSQ VAKDMDEKGV IDMEVGIFSH PYGSTQETEE SGQSEETTES EENADQTNES 360
  361 SEEAETQKAQ TPGSSSTNGS SDSNDSSETS QIEDNPSTTP SSLNEN

Type	Start	End	Confidence
Cytoplasmic	1	108	0.99
Transmembrane Helix	109	131	0.90
Non-Cytoplasmic	132	406	0.99