YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTPLA
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRLTEAAAA GSGSRAAGWA GSPPTLLPLS PTSPRCAATM ASSDEDGTNG GASEAGEDRE  60
   61 APGERRRLGV LATAWLTFYD IAMTAGWLVL AIAMVRFYME KGTHRGLYKS IQKTLKFFQT 120
  121 FALLEIVHCL IGIVPTSVIV TGVQVSSRIF MVWLITHSIK PIQNEESVVL FLVAWTVTEI 180
  181 TRYSFYTFSL LDHLPYFIKW ARYNFFIILY PVGVAGELLT IYAALPHVKK TGMFSIRLPN 240
  241 KYNVSFDYYY FLLITMASYI PLFPQLYFHM LRQRRKVLHG EVIVEKDD

Type	Start	End	Confidence
Cytoplasmic	1	74	0.65
Transmembrane Helix	75	97	0.86
Non-Cytoplasmic	98	123	0.62
Transmembrane Helix	124	146	0.84
Cytoplasmic	147	204	0.58
Transmembrane Helix	205	225	0.94
Non-Cytoplasmic	226	247	0.72
Transmembrane Helix	248	268	0.92
Cytoplasmic	269	288	0.74