YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68193559, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLQQVLREK VMLESRMGEE AAARKGRKSP RRFSRLLQAM AEDTARERIS VNDLVVAMGD  60
   61 RAFGALMLVF ALPNVLPTPP GTSGLLGLPL VYLAAQLMLG QRPWLPKFIG SRSIRREDFA 120
  121 AFIERAAPWL RRAERLLRPR LVFLVSPAAE RLVGAVCLVL AIVLFLPVPL GNMLPALSIS 180
  181 VFSFGILGRD GLWVICGVLL AVISAVVAGG VVFALVKGAI FVLTRRF

Type	Start	End	Confidence
Cytoplasmic	1	53	0.93
Transmembrane Helix	54	76	0.78
Non-Cytoplasmic	77	83	0.70
Transmembrane Helix	84	105	0.84
Cytoplasmic	106	147	0.92
Transmembrane Helix	148	170	0.82
Non-Cytoplasmic	171	190	0.77
Transmembrane Helix	191	216	0.90
Cytoplasmic	217	227	0.72