YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76785720, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMIGKPRGR RGVNLQILPS AMTVLSICAG LTAIKFALEH QPKAAMALIA AAAILDGLDG  60
   61 RVARILDAQS RMGAEIDSLA DAVNFGVTPA LVLYVSMLSK WPVGWVVVLL YAVCVVLRLA 120
  121 RYNALQDDGT QPAYAHEFFV GMPAPAGAVS MIGLLALKMQ FGEGWWTSGW FLSFWVTGTS 180
  181 ILLVSGIPMK KMHAVSVPPN YAAALLAVLA ICAAAAVLAP YLLIWVIIIA YMCHIPFAVR 240
  241 SQRWLAQHPE VWDDKPKQRR AVRRASRRAH PYRPSMARLG LRKPGRRL

Type	Start	End	Confidence
Cytoplasmic	1	12	0.96
Transmembrane Helix	13	36	0.88
Non-Cytoplasmic	37	43	0.78
Transmembrane Helix	44	63	0.78
Cytoplasmic	64	77	0.75
Transmembrane Helix	78	97	0.57
Non-Cytoplasmic	98	100	0.57
Transmembrane Helix	101	122	0.84
Cytoplasmic	123	137	0.57
Transmembrane Helix	138	157	0.94
Non-Cytoplasmic	158	165	0.56
Transmembrane Helix	166	187	0.89
Cytoplasmic	188	196	0.56
Transmembrane Helix	197	219	0.78
Non-Cytoplasmic	220	220	0.38
Transmembrane Helix	221	238	0.74
Cytoplasmic	239	288	0.75