YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|87312171, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLSAVIPVY NEADSLRELH RELTEVAAAN GYLMEIIFVD DGSTDASWEV ERELAESDPQ  60
   61 VKAIRFRRNF GKAAALDAGF RIARGELVMT LDADLQDDPH EIPRFLEQIE NGFDVVSGYK 120
  121 QVRHDPWHKV LPSRIFNWMV STLTGVRLHD HNCGMKCYRR EIFEEVRLYG ELHRFVPVLA 180
  181 SARGWKIGEI VIQHRARQFG QSKYGFFRIF KGFLDLLTVK FITGFGQRPQ HLLGGIGLAF 240
  241 FAFGGLGMTV LAIWWCLSRI PALGLNPLNI HETAMIFYVI TALLLGTQFL MVGLLAELIT 300
  301 AQNSRGQSPY SISETAGYLK HHDSSADQNV

Type	Start	End	Confidence
Cytoplasmic	1	203	0.71
Transmembrane Helix	204	224	0.48
Non-Cytoplasmic	225	232	0.61
Transmembrane Helix	233	257	0.90
Cytoplasmic	258	273	0.68
Transmembrane Helix	274	299	0.85
Non-Cytoplasmic	300	330	0.70