YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|87311991, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHHQILIVG GGTAGITVAA RLRNANHALD IAIIEPAEQH YYQPLWTLVG GGMFAPEDSG  60
   61 RNEADVIPYG VKWIKDAVVA FDPNENKVTT REGDEVSYEH LIVAPGIQVN WDKIKGLKES 120
  121 VGKSGVCSNY SINTVGSTWK FIRELKEGTA LFTQPAGAVK CGGAPQKICY LAEDHFRKVG 180
  181 VRDKINVVFT AAGPRLFAVE KYREVLEKAA ARKNVDTRFR LNLVEIRPAA KEAIYRHMDT 240
  241 ENEVVIQYDM IHVTPPMSAP DFVAQSPLAS EAGWVDVDKY TLQHVRFPNV FALGDASSLP 300
  301 TSKTGAAIRK QAPVLVENLL ARMRHEPLTA KYDGYTSCPV VTGYDSLVLA EFDYDNQPAE 360
  361 TFPFNQAQER FSMLLLKKFG LPALYWHGML KGRV

Type	Start	End	Confidence
Signal Peptide	1	19	0.71
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	394	0.99