YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148822960, gi...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.65
Transmembrane Helix	12	31	0.53
Non-Cytoplasmic	32	40	0.44
Transmembrane Helix	41	75	0.58
Cytoplasmic	76	149	0.50
Transmembrane Helix	150	169	0.63
Non-Cytoplasmic	170	177	0.44
Transmembrane Helix	178	202	0.71
Cytoplasmic	203	471	0.54
Transmembrane Helix	472	494	0.45
Non-Cytoplasmic	495	495	0.28
Transmembrane Helix	496	515	0.45
Cytoplasmic	516	516	0.31
Transmembrane Helix	517	541	0.52
Non-Cytoplasmic	542	559	0.55
Transmembrane Helix	560	582	0.58
Cytoplasmic	583	591	0.48
Transmembrane Helix	592	613	0.70
Non-Cytoplasmic	614	687	0.41
Transmembrane Helix	688	710	0.64
Cytoplasmic	711	856	0.66
Transmembrane Helix	857	877	0.51
Non-Cytoplasmic	878	913	0.50
Transmembrane Helix	914	936	0.46
Cytoplasmic	937	946	0.50
Transmembrane Helix	947	969	0.78
Non-Cytoplasmic	970	975	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFSVLPPEI NSALIFAGAG PEPMAAAATA WDGLAMELAS AAASFGSVTS GLVGGAWQGA  60
   61 SSSAMAAAAA PYAAWLAAAA VQAEQTAAQA AAMIAEFEAV KTAVVQPMLV AANRADLVSL 120
  121 VMSNLFGQNA PAIAAIEATY EQMWAADVSA MSAYHAGASA IASALSPFSK PLQNLAGLPA 180
  181 WLASGAPAAA MTAAAGIPAL AGGPTAINLG IANVGGGNVG NANNGLANIG NANLGNYNFG 240
  241 SGNFGNSNIG SASLGNNNIG FGNLGSNNVG VGNLGNLNTG FANTGLGNFG FGNTGNNNIG 300
  301 IGLTGNNQIG IGGLNSGTGN FGLFNSGSGN VGFFNSGNGN FGIGNSGNFN TGGWNSGHGN 360
  361 TGFFNAGSFN TGMLDVGNAN TGSLNTGSYN MGDFNPGSSN TGTFNTGNAN TGFLNAGNIN 420
  421 TGVFNIGHMN NGLFNTGDMN NGVFYRGVGQ GSLQFSITTP DLTLPPLQIP GISVPAFSLP 480
  481 AITLPSLTIP AATTPANITV GAFSLPGLTL PSLNIPAATT PANITVGAFS LPGLTLPSLN 540
  541 IPAATTPANI TVSGFQLPPL SIPSVAIPPV TVPPITVGAF NLPPLQIPEV TIPQLTIPAG 600
  601 ITIGGFSLPA IHTQPITVGQ IGVGQFGLPS IGWDVFLSTP RITVPAFGIP FTLQFQTNVP 660
  661 ALQPPGGGLS TFTNGALIFG EFDLPQLVVH PYTLTGPIVI GSFFLPAFNI PGIDVPAINV 720
  721 DGFTLPQITT PAITTPEFAI PPIGVGGFTL PQITTQEIIT PELTINSIGV GGFTLPQITT 780
  781 PPITTPPLTI DPINLTGFTL PQITTPPITT PPLTIDPINL TGFTLPQITT PPITTPPLTI 840
  841 EPIGVGGFTT PPLTVPGIHL PSTTIGAFAI PGGPGYFNSS TAPSSGFFNS GAGGNSGFGN 900
  901 NGSGLSGWFN TNPAGLLGGS GYQNFGGLSS GFSNLGSGVS GFANRGILPF SVASVVSGFA 960
  961 NIGTNLAGFF QGTTS