YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|87289302, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.90
Transmembrane Helix	10	30	0.95
Cytoplasmic	31	47	0.91
Transmembrane Helix	48	71	0.87
Non-Cytoplasmic	72	88	0.89
Transmembrane Helix	89	112	0.89
Cytoplasmic	113	119	0.87
Transmembrane Helix	120	141	0.92
Non-Cytoplasmic	142	160	0.89
Transmembrane Helix	161	183	0.87
Cytoplasmic	184	196	0.86
Transmembrane Helix	197	217	0.90
Non-Cytoplasmic	218	233	0.86
Transmembrane Helix	234	256	0.87
Cytoplasmic	257	264	0.87
Transmembrane Helix	265	290	0.77
Non-Cytoplasmic	291	316	0.62
Transmembrane Helix	317	336	0.91
Cytoplasmic	337	350	0.68
Transmembrane Helix	351	373	0.87
Non-Cytoplasmic	374	1259	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAADPSLDI AWMLICAALV MLMQGGFCLL ESGMARAKNS FNVALKNLID FCVSSVIFWA  60
   61 FGFALMFGAS YHGLFGTTNF LLEDSASPWL MAFLFFQLVF CGTATTIISG AVAERIRFQG 120
  121 YLLISLFVSA IIYPLFGHWA WGGAIEGTPT GWLAQLGFID FAGSTVVHSV GGWVALAAVV 180
  181 VIGPRIGRFD GGEDRPISGH NLTLATFGAL VLWFGWFGFN GGSTLSMNSD VPKILVNTNL 240
  241 AGAMGALTCL VLSKWVHKRP DVGQVMNGAI AGLVGVTASC HILAPWAAAL VGAGSGLICS 300
  301 GVTYLLPKMK IDDVIGAVPA HACAGCFGTV ALALLADPVH FGEGVTRWQQ LGVQLLGVGT 360
  361 CFVWAFGGGY AFISLANLVM PFRVPRDHEL RGLNISEHGA STELIDLLTD MQRQRNLGDF 420
  421 SDDVHVEPHT EVGQIAAEYN RVLAKVNCEM KQRSEAERRF REIFENAVEG IYQTTPEGFF 480
  481 VTANPALARM LGYPDLASLR DDIKNVATDV YVNRDRRDEF VDEIHQNGVV FNFESEIRRG 540
  541 DGTFAWISEN ASARRNQNGD VLYYEGTVED ITEHRKALQL TDEIKAAEAA NEAKSTFLAS 600
  601 MSHEIRTPLN GVIGFLDLLH TTKLDDQQGR FVELAKSSAS SLLHLINDIL DLSKIEAGGI 660
  661 ELEQTEFVLT DLIESVPEMF APQCRMTGLE LNSSVATDVP QAAIGDCERI RQVLVNLFAN 720
  721 AVKFTETGGV YLRVERERSV ASSHDAIARI RFSVEDTGIG VPRSKMQRLF KAFSQVDAST 780
  781 TRSYGGTGLG LAICKQLVEL MGGEIGVESE VGKGSTFWFT LPLQAIERST CNLIPNIQGL 840
  841 RVLAVDDNHM NLQVIKEQLQ SWGVEVSTAG NGRRALALLE DAAKRNVPYQ LAILDHLMPE 900
  901 LDGLRLAHLI NDHQMLHETR LLMLTSYEHT IPHAELKKLE MVCLPKPVRQ TRLLDALVAL 960
  961 TGERSPKQKV EKVENQQPVR ERAPLEGAIL VVDDNEINRI VAKEILQSEG FQVSLAENGR1020
 1021 QAVEKIQSGQ FDLVLMDCEM PEMDGFAATR MIRNLAENGH PELANLPIVA LTAQAVLGDK1080
 1081 ERCLAAGMNG YVMKPVNRSE LIDTIVDCLS RKDSSVAEMD LLSLEEETDH LEEFVIDPTE1140
 1141 IESSIDVDDL LARCGDNDDL ARLILNKFRD RSTKDAAALA EEVAAGRADA VAQLAHSLKG1200
 1201 MAANISAKQV AAAADLLEQA AKASQTEELA DLFSSVVARL ETCESAIDRL LAGTEIGER