YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|87249962, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKLFLTFFY SGSIKKASGT FGTIAALIPA FFILKYLGIN TLFLLSILIF VASIRVIDDY  60
   61 EKKTGIHDDK HIVIDEVAGV FLACAIAASV ENSIVNFVLA FVLFRFFDIT KPSIIGKIDK 120
  121 KVKGGLGVML DDMLAGLFAG LLSAVIYGFL LKFNLVFWDI NLKDLF

Type	Start	End	Confidence
Cytoplasmic	1	11	0.89
Transmembrane Helix	12	33	0.77
Non-Cytoplasmic	34	38	0.51
Transmembrane Helix	39	57	0.77
Cytoplasmic	58	76	0.68
Transmembrane Helix	77	100	0.81
Non-Cytoplasmic	101	133	0.67
Transmembrane Helix	134	156	0.86
Cytoplasmic	157	166	0.67