YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68181979, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	43	0.71
Transmembrane Helix	44	69	0.72
Non-Cytoplasmic	70	78	0.72
Transmembrane Helix	79	96	0.90
Cytoplasmic	97	107	0.81
Transmembrane Helix	108	130	0.89
Non-Cytoplasmic	131	135	0.71
Transmembrane Helix	136	157	0.87
Cytoplasmic	158	172	0.72
Transmembrane Helix	173	193	0.85
Non-Cytoplasmic	194	221	0.82
Transmembrane Helix	222	245	0.88
Cytoplasmic	246	260	0.76
Transmembrane Helix	261	280	0.85
Non-Cytoplasmic	281	281	0.39
Transmembrane Helix	282	300	0.67
Cytoplasmic	301	310	0.60
Transmembrane Helix	311	332	0.72
Non-Cytoplasmic	333	336	0.63
Transmembrane Helix	337	358	0.86
Cytoplasmic	359	368	0.91
Transmembrane Helix	369	390	0.94
Non-Cytoplasmic	391	397	0.79
Transmembrane Helix	398	420	0.92
Cytoplasmic	421	679	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLTPRRNTR YTRRTPTPNR NRSMDEALLQ ITIYLTAMLI AVPISIRFGL GSVLGYLLAG  60
   61 IAIGPVLGLV GSETQDLQHY AEFGVVLMLF LIGLELDPRT LWDMRKRLVG LGGSQILLST 120
  121 AILTGGAMIL GLSTSLSLAI GITLALSSTA IVLTTLSEKG LMGTTGGRGA FSVLLTQDIA 180
  181 VIPALALLPL LATGAGIRFT EDGAIERTAE DAHHSLSLVE GLPAWGVTLV TIAAVIAVIL 240
  241 AGRYLSPFVF RVIHNAKLKE LYTVAALAFV VGIAELMILV GLSPALGAFL AGVVLANSEF 300
  301 KHELEADIEP FKGLLLGLFF ITVGAGINFA TLFANPFLII GLTLAIMVIK GVVLYAIARV 360
  361 TRMEGRDRWL FTLSLAQAGE FGFVLVAFGV SQAVFPTYIA QILLLVVALS MLLTPLSFIL 420
  421 YEAIGARLGT GVEDAPEHDE IDEEAPVIIA GIGRFGQSVH RMVRASGFKT VVLDSNLETI 480
  481 QLMRRFGLKS FFGDPTRPEL LKAAGLDKAR VLVVCVDNKQ AAVKLVRYAK RTRPDISVVA 540
  541 RAHDLLHVYE LYAAGADHII REVFDSSLRA ARYVLEDMGL SDYEAHAMEI AFYRHDRHNL 600
  601 RALAEVWKPG IPVTENEDYM RLTREMADNL ESAVMTHLDA MEDEGGGSTA HTRGDVGALS 660
  661 GISRTPGGTP RRPDGKADG