YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88865831, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	157	0.75
Transmembrane Helix	158	178	0.81
Non-Cytoplasmic	179	180	0.52
Transmembrane Helix	181	198	0.88
Cytoplasmic	199	217	0.85
Transmembrane Helix	218	238	0.90
Non-Cytoplasmic	239	256	0.90
Transmembrane Helix	257	280	0.92
Cytoplasmic	281	298	0.84
Transmembrane Helix	299	322	0.87
Non-Cytoplasmic	323	333	0.82
Transmembrane Helix	334	358	0.90
Cytoplasmic	359	378	0.96
Transmembrane Helix	379	399	0.95
Non-Cytoplasmic	400	406	0.66
Transmembrane Helix	407	426	0.90
Cytoplasmic	427	441	0.79
Transmembrane Helix	442	465	0.86
Non-Cytoplasmic	466	480	0.68
Transmembrane Helix	481	506	0.84
Cytoplasmic	507	515	0.59
Transmembrane Helix	516	542	0.76
Non-Cytoplasmic	543	562	0.68
Transmembrane Helix	563	586	0.88
Cytoplasmic	587	593	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVGRACGCG RAQHYRIDGD YPGGGGLALL VPGADLGHRG YLADDADYRG RCRCGLRRTA  60
   61 SGPCQRRSDR ASWAACHAHH RYRDAGADVV HHRAVRLRLD GQGLRDGAGL HHLDPVDRAS 120
  121 SVLLVSGRRH GRLRRTGGRA FGHWHRHLPG HRSNRGQFLM DPSTIGFVGF GLLFVLLLIR 180
  181 MPVGAAMMLV GTAGIWMIRE RAAIPKLAGE IFNEASNYPL TIIPLFVLMG NLAGVSGMSR 240
  241 DLYTAAHAWL GHMKGGLASA TIVGCAGFSA LSGSSLAAAL TMGRVALPEM QRYKYDNGLA 300
  301 TGAIAAGGTL GILIPPSAGF VVYAILTEES IGRLFMAGVL PGLMLTSLFI FAIWLSVLRK 360
  361 PERAPAAAER MPIGQRFSAL FRSFWIIGII VATIGGIYTG VFSAVEAAGV GAFLALLVTL 420
  421 IRGTMTWANM VDVFTSTLKS TGTVFLILFG AFVFKSFVGF TGITITLSEW VAVQGFTGFQ 480
  481 IVVAFLLLFI VLGMFMEGFA ILVLTVPLIQ PIIQPLGIDM IWFGVLMVIV LEMGLISPPV 540
  541 GVNVFVVKGI ARDVPLNTIF RGIWPFWFAM LAAVLLILTF PQIALLLPNT MFG