YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|163849176, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQIDTTAQT EPVVVQTYPF TVSVVIPAYN EAHGIAQVIE RVRAVLPEAE IVVVDDCSQD  60
   61 DTATVAHTAG ARVIRHPVNR GNGAAVKTGI RRARGEVVLL MDADGQMDPR YIPDLLGGIA 120
  121 AGYDMVVGAR TRETQGDSIF RRWGNRALDA LGSYLVETEV RDLTSGYRAM RRDVIMEFIN 180
  181 LLPNRYSYPT TSTLALLKAG YHVGYVPVTG QRRQGGRSGQ KLLRNGIRFG LIILRIVSLF 240
  241 APLRVYFPVA LSMQGLALLS FLISFFITDP FRFHIPNSAM GLFVGSIIVF MFGLNAEQVA 300
  301 ALRFQRPLRS NEEE

Type	Start	End	Confidence
Cytoplasmic	1	230	0.86
Transmembrane Helix	231	265	0.71
Non-Cytoplasmic	266	274	0.40
Transmembrane Helix	275	299	0.80
Cytoplasmic	300	314	0.52