YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67980919, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERNLTNDVQ LVTTQTIEID QELRLESGRL LGPLTLAYET YGTLNDTASN AILVTHAWTG  60
   61 DAHAAGRHSE EDRKPGWWDN MIGPGRVLDT DKYYVICSNV IGSCKGSTGP TSTNPQTGRP 120
  121 YRLKFPIVMV RDMVRAQKLM LDALGISSLV TVIGGSMGAM QALEWGIHYP DMVRSIIPIA 180
  181 GTGRTSPMAI ALNALARQAI YNDPLWKKGN YKPEHQPASG FALARAVGHI SFLSEESMAM 240
  241 KFGRRFSARD GLFDFFGQFE VERYLEYNGN SFPARFDCNS FLYLAKALDL YDVSWNFSGM 300
  301 EEALERLDCP SLWFAFTSDW LYRPEQTEEV VDVLQKANKP VTYHLIDSDY GHDSFLVEPE 360
  361 KFTPYVVEFL RQLEV

Type	Start	End	Confidence
Cytoplasmic	1	138	0.83
Transmembrane Helix	139	160	0.76
Non-Cytoplasmic	161	179	0.78
Transmembrane Helix	180	196	0.48
Cytoplasmic	197	375	0.57