YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76164515, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNYGFLIDQ RKCIGCHACS TACKSENEVP LGVYRTWVKY VETGTFHSTR RHFQVTRCNH  60
   61 CANPPCVRIC PVTAMYQRTD GIVEFDPKVC IGCKACLQAC PYDAIYIDPE SHNAAKCHFC 120
  121 AHRIDQGLKP ACEIVCPEQA IISGDLDDPN SLISQLIARE PVSVRKPEQG TAPKLFYIDA 180
  181 DQTTLTPTAS TTSSTFMWAD VVSEQLVGHH HTNGRKQHAR EVIPLTAASG AKIRPPREQG 240
  241 LGSGQSALML GGRVAGHMVQ TGYNAQHKIP WHWPVPAYLV TKGIGSGVFL AVAAAVGLGL 300
  301 APLTAPLLAI ALFVSLLFIG ITTALLVFDL EKPHLFFTIL TRPQWRSWLT RGAFILIAFT 360
  361 LVGGLWFLAE AGAALNIWPE AAVSGLRPIL AWIGMPLAVL AAIYTAFLFA QAEGRDLWQS 420
  421 PLLPAHLLVQ AVMVGAGTLL LLAPFVAMPA AFLTLLGWLF AGSLLIDLFM LLVGEFGIPH 480
  481 ASEVAARAAH DISHGRYRNH FWQGAIALGH VLPVLCIILA FIAPTLAMPL LAVAGLAAIA 540
  541 GLYAFEYAFV MAPQHVPNS

Type	Start	End	Confidence
Cytoplasmic	1	277	0.89
Transmembrane Helix	278	300	0.91
Non-Cytoplasmic	301	306	0.76
Transmembrane Helix	307	328	0.95
Cytoplasmic	329	347	0.94
Transmembrane Helix	348	369	0.95
Non-Cytoplasmic	370	388	0.90
Transmembrane Helix	389	410	0.94
Cytoplasmic	411	425	0.85
Transmembrane Helix	426	447	0.90
Non-Cytoplasmic	448	455	0.65
Transmembrane Helix	456	478	0.87
Cytoplasmic	479	499	0.91
Transmembrane Helix	500	523	0.90
Non-Cytoplasmic	524	529	0.72
Transmembrane Helix	530	550	0.92
Cytoplasmic	551	559	0.87