YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68177696, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKNKKVVLG VCGGIAVYKA VELLRLLVKA GADVSVIMTR SAQEFVTPLT FQTLSGNPVH  60
   61 TELFNLYQEK EIGHISLADR ADLFLVAPAT ANVIGKVAAG IADDLLTTAL MATRAPVLFA 120
  121 PAMNVHMYEN PIYQRNEACL RELGYHFINP AVGALACGYE GQGKLPEPEA IFSAAQAVLA 180
  181 PQDLAGQHLL VTAGPTREEL DPVRYLSNYS SGKMGYAIAR AARMRGADVV LVSGPTFLTP 240
  241 PQGVTLIPVV SAEQMRKTVL DALPKATAVV KSAAVADYRP ASLSTQKLKK SDEDMTLVLE 300
  301 KNPDILAEVG AGKEGRVLVG FAAETQDLLK HAADKLKRKN LDLIVANDVT QAGAGFDVDT 360
  361 NIVKLLHADG HVEALPQLSK DEVAHQLLDR VVELLKQREA KTDQV

Type	Start	End	Confidence
Signal Peptide	1	19	0.52
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	405	0.99