YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|95928934, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDKTVCPFF RKDEDICDVG CEYMSNHDIK TIITYCTDKY DQCIKYGELS ERFPGMLPKE  60
   61 AAFQSHTNGM NKEKIMANES QNLSLQDTTA NPAPLGLLGF GMTTVLLNLH NAGFFPLDAM 120
  121 ILGMGIFYGG LGQILVGIME WKKNNTFGAT AFTSYGLFWL TLVALILLPK TGVVEASSPF 180
  181 AMGCYLSMWG LFSAFLFLGT FRLSRALQVV FGSLVLLFAL LAAADFTGNH ALKVIAGYEG 240
  241 IFCGLSAFYT GLAQVMNEVF DREVAPLGAV VIKK

Type	Start	End	Confidence
Cytoplasmic	1	89	0.94
Transmembrane Helix	90	110	0.83
Non-Cytoplasmic	111	118	0.64
Transmembrane Helix	119	138	0.93
Cytoplasmic	139	146	0.82
Transmembrane Helix	147	168	0.91
Non-Cytoplasmic	169	178	0.74
Transmembrane Helix	179	199	0.93
Cytoplasmic	200	206	0.77
Transmembrane Helix	207	227	0.91
Non-Cytoplasmic	228	233	0.80
Transmembrane Helix	234	253	0.86
Cytoplasmic	254	274	0.84