YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|95930383, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDWFLNLTP VMQALVATLF TWFMTALGAS VVIFFKTINR KVLDGMLGAA AGVMIAASFW  60
   61 SLLAPAIEMT ENSGGTPWIP ATVGFLSGGA FLWLVDKLLP HLHSGFPMSE AEGIKTSWQR 120
  121 STLLCLAITL HNIPEGLAVG VAFGALAADL PSASLAGAIA LAVGIGIQNF PEGSAVSVPL 180
  181 RREGMSRAKS FWYGQLSGTV EPIAGVLGAM AVIWMEPLLP YALSFAAGAM IYVVVEEVIP 240
  241 ESQLARNTDL ATVGAMCGFA IMMTLDVALG

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.92
Transmembrane Helix	14	35	0.93
Cytoplasmic	36	44	0.79
Transmembrane Helix	45	67	0.89
Non-Cytoplasmic	68	75	0.89
Transmembrane Helix	76	95	0.93
Cytoplasmic	96	121	0.85
Transmembrane Helix	122	145	0.79
Non-Cytoplasmic	146	151	0.64
Transmembrane Helix	152	171	0.90
Cytoplasmic	172	190	0.92
Transmembrane Helix	191	213	0.93
Non-Cytoplasmic	214	217	0.84
Transmembrane Helix	218	239	0.82
Cytoplasmic	240	247	0.82
Transmembrane Helix	248	269	0.86
Non-Cytoplasmic	270	270	0.92