YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|222527232, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTFPTPRLD EVKALIAEQR WLDLREQLSR WPAPEIADLL RELSAAERML VFRVLPRALA  60
   61 GEVFSYLEHD DQYELLTSLS LEETRLLLAN LSPDDRTQLF EELPGQVTQK LLNLLSPHDL 120
  121 KEARQLLGYP EESVGRLMTP DYVAVRPGWT IARALDHIRV RGRDSETIDV IYVTDEKWRL 180
  181 LDAIELRRFI LAEPTQTVRS LMDESYVVLS AFDDRERAVE ALRRYSLPAL PVVDSDGVLV 240
  241 GIVTFDDLID VAEEEVTEDF YRSAAIEPLR GSYLETPIFE LVRKRVPWLV ALVFVNVFSG 300
  301 AAIAAFEETI AAVVALVFFL PLLIGSAGNA GSQSATLTVR ALATGDIDSG DWWRLLAKEL 360
  361 LVALLLGSAM ALAVGLLGVI RVGWHVASVV SLTMMVLVLM GSLIGMSLPF LLRRLGLDPA 420
  421 TASGPLVTSL SDIGGVLIYF SLATWLLGLT S

Type	Start	End	Confidence
Cytoplasmic	1	285	0.95
Transmembrane Helix	286	306	0.91
Non-Cytoplasmic	307	310	0.77
Transmembrane Helix	311	332	0.87
Cytoplasmic	333	359	0.85
Transmembrane Helix	360	380	0.94
Non-Cytoplasmic	381	388	0.63
Transmembrane Helix	389	412	0.88
Cytoplasmic	413	425	0.77
Transmembrane Helix	426	447	0.88
Non-Cytoplasmic	448	451	0.77