YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86167778, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAVAVLAAG KGTRMKSALP KVLQPLAGAT LVERVLASAR RLQPERRLLI VGHQAERVEQ  60
   61 QLSHVEGLDF VLQQPQNGTG HAVQQLLEPL SDFDGDLLVL NGDVPLLRQD TVEQLVATHR 120
  121 SSGADVTLLT ARLADPTGYG RVFADAQGQV SGIIEHRDCS EEQRRNTLTN AGIYCFNWRQ 180
  181 LARVLPQLST DNDQGELYLT DTVAMLEKAM HVEVADPAEV NGINNRQQLA QCEGLLQERL 240
  241 RQHWMAEGVT FIDPASCTLS EECHFGRDVV IEPQTHLRGR CRIGDNCRLG PGSLLEDAVL 300
  301 GCDVTVLQSV VRGATAGDGV AIGPFAHLRP AAEIGDQCRI GNFVEVKKSV LGSGSKVNHL 360
  361 SYIGDAELGR DVNVGAGTIT ANYDGVNKHR TVIGDGSKTG ANSVIVAPVT IGQAVTIGAG 420
  421 STITKDVPDG ALALGRAKQL IKEHWQGPKP EA

Type	Start	End	Confidence
Signal Peptide	1	37	0.61
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	452	0.99