YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86168561, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.65
Transmembrane Helix	6	26	0.78
Cytoplasmic	27	31	0.37
Transmembrane Helix	32	59	0.72
Non-Cytoplasmic	60	75	0.54
Transmembrane Helix	76	97	0.83
Cytoplasmic	98	107	0.59
Transmembrane Helix	108	123	0.77
Non-Cytoplasmic	124	126	0.50
Transmembrane Helix	127	145	0.70
Cytoplasmic	146	175	0.68
Transmembrane Helix	176	200	0.79
Non-Cytoplasmic	201	201	0.40
Transmembrane Helix	202	230	0.71
Cytoplasmic	231	244	0.59
Transmembrane Helix	245	267	0.77
Non-Cytoplasmic	268	274	0.62
Transmembrane Helix	275	295	0.77
Cytoplasmic	296	304	0.57
Transmembrane Helix	305	322	0.73
Non-Cytoplasmic	323	332	0.78
Transmembrane Helix	333	355	0.94
Cytoplasmic	356	371	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPFLISVLD VVVGIGLLFG GGELFVQGAV SLALILGIPQ LVIGLTVVAL GTSAPELFVS  60
   61 VGSALAGSAD LAVSNVVGSN IFNVMVVLGS SALVMPLHVE SRLVRRDVPL LLAVSAAVWG 120
  121 MASAGRVTWQ AGVALLIALV INTLWEIQTA KQEPEGIEEA EPEVDATSAN RGWAGSLIRL 180
  181 AIGIVLLGFG SNVLVRGASA AAAMLGVSEA VIGLTIVSAG TSMPELITSL MAAMRGRTDL 240
  241 AIGNVVGSNL LNQLLVLSGS ALASGAYGLH VDPILIQRDL PVMLLTTLAC MPIFWSDGRI 300
  301 TRVEGGVLLG LYVFYVIDQV LPRTLPSWQD EFRLALLCLV LPVVLVLISV QVISHWRQLR 360
  361 YSRRRGDDDL A