YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|151939183, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVPDNSENV TPSSLRYQWE LFLLAISFFS RLPVPQALPY SEERMNQAGR YFALVGLVLG  60
   61 ALCALVFSLS SILFPESVAI VLTMVFSLLL TGAFHEDGLT DMADGIGGGM TVERRLSIMK 120
  121 DSRIGTYGAA TLIMALLAKY VFWSELANLP QFWLVIVVAY TASRALAATL IYDMPYVSDS 180
  181 DTSKSKPLAN SQSSLEVSIL LFTGGITLLV LGITQAIFIS LVLVVFRLMF KRWLTKRIGG 240
  241 FTGDCLGAAQ QLSELLVYLT MIGFYHIS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.61
Transmembrane Helix	21	39	0.60
Non-Cytoplasmic	40	47	0.40
Transmembrane Helix	48	73	0.82
Cytoplasmic	74	76	0.34
Transmembrane Helix	77	95	0.80
Non-Cytoplasmic	96	123	0.49
Transmembrane Helix	124	143	0.94
Cytoplasmic	144	151	0.47
Transmembrane Helix	152	171	0.59
Non-Cytoplasmic	172	203	0.84
Transmembrane Helix	204	228	0.88
Cytoplasmic	229	268	0.60