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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|116185291, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.63
Topology Confidence: 0.06
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLATASIGR KLLLSFIAMA MLVMLSALIG VSGFSLVAKT ERNVVDSAIP AMIEARQVSE  60
   61 LSTRIISSVQ LLSNARNEQE RKESGRVLFE QLESLLTHIK ELGSESFDSQ LLEDLENNVQ 120
  121 NVIDNLAELG VSVERKLWLA KEIDTRVEEM RLLSEELEQL TRTQVQNTST IAVANVTHIY 180
  181 DLLESNKKSQ VYQALDALVE VDLDLTERLH ELHLLAFKML NQIEEARTLT NIERIQQVQS 240
  241 DFESNLKIMK RRVLAVEDPT RSKQMSQLLT ELGKRQVVFT ILMQQYENNE QSQQLMQKTL 300
  301 ELFSELNGTV NKLVDDSNKT TTVAVDELTS TLKFAQWSLT VISIVGLIVL VLILWRVVYL 360
  361 SVVKRLAEYS AALLSVAQGN LAVELEVKGK DELAHMGQAI ITARNTAQAL KVVAEGEAQA 420
  421 KRELEEHKEH LEELVEQRTS QLKQANRRLN EEVLNHAKAR KQAEQASRAK SAFLATMSHE 480
  481 IRTPMNGVLG TARLLIDSGL NPIQKRYAEI INRSGKTLLA ILNDVLDYSK IEAGHLEIRH 540
  541 MGFDLHQMVE DTFQLMNSRA QEKRLLFSYH IESDVSRYWK GDVTRISQVL NNLVGNAIKF 600
  601 TDEGEIDIYV SLNPEDESQV LFEVSDTGIG IAKKDQRTLF DAFTQAEGGM SQTGGTGLGL 660
  661 AISKRIIEAM GGILEVDSEE GHGSRFWFSI PLEESEPVET GAVATARCKV KAKVLLVEDN 720
  721 EVNRVVAEGF LESMGHQVVM AENGSQAEQL ISTQDFDIAL VDINLPDCDG TELIQRLKQI 780
  781 ECNKPANKAL AATPMIAVSA HVFAEEVERY LAAGFDGYLP KPLAKEALAA LIQDVLDGKP 840
  841 LLLPQNADCT PFDQTSPQEQ AIQSKVVQVP KTEESDVVII NPSVIESDMK ILGREKMLHI 900
  901 INLFRTTSAD VLSKLQASAG GNDSKEVKNL AHKLKGSAGS LGLTALMNSC QAIEAAPQPL 960
  961 DTYMATKDQL ASQVSESIQA LDELMAK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle