YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116185726, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	44	0.93
Non-Cytoplasmic	45	55	0.83
Transmembrane Helix	56	78	0.86
Cytoplasmic	79	86	0.74
Transmembrane Helix	87	111	0.87
Non-Cytoplasmic	112	140	0.86
Transmembrane Helix	141	161	0.92
Cytoplasmic	162	170	0.85
Transmembrane Helix	171	191	0.89
Non-Cytoplasmic	192	201	0.84
Transmembrane Helix	202	222	0.93
Cytoplasmic	223	234	0.88
Transmembrane Helix	235	258	0.89
Non-Cytoplasmic	259	305	0.85
Transmembrane Helix	306	339	0.68
Cytoplasmic	340	359	0.74
Transmembrane Helix	360	380	0.94
Non-Cytoplasmic	381	415	0.77
Transmembrane Helix	416	437	0.94
Cytoplasmic	438	454	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLWHPSIIP IERKPKAGKK LLGAPPLILS LSFACLIILG TVLLKLPIAT TEPITWIQSL  60
   61 FTATSAITVT GLVVVDTGTA FTPFGQVVIA FLIQCGGLGL MTFAIVTLLA LGGKIGFLER 120
  121 AVAREAFNQT DSSTLIATAK SVLMFALLVE LIGFTILSVY WSEELGWKTS LFHGFFYTIS 180
  181 AFNNAGFALS ADSLMPYVDD PVVNFTITSL FIIGGLGFSV WIDLKRNRRW HRLTVYSRMM 240
  241 ILGTMIINVV ALIAIYLIEY DNPNTLAPLS EAGKWWASWF QAVTPRTAGF NTLAIDQLED 300
  301 ATTAIILVLM FIGGGSLSTA SGIKVVTFMV LVLATYSYLR RDEATYAFQR EIPKETISKA 360
  361 LALTLISVGV TWFAIFTLLL TERASMLDII FEAVSALGTV GLSRGLTGSL SEPGELVIIF 420
  421 MMFMGRLGPL TLAYFLASPR KKKARYASTK LAIG