YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86161969, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVSDLSPKI HPEEQQRITP DQIPQEAFDW YDEYAHGDID RRTFLNRLGA LGVAGLSLGV  60
   61 IASALTPNYA LAEQVSFNDA DITASYLTFD SPEGYKEGKG YLVTPKNLSG TAPAVLVIHE 120
  121 NRGLNPYIKD VARRLAKAGF VAFAPDALHP LGGYPGNDDE GRSMQKSLDR SKIEADFMAA 180
  181 AKMLKAHPAS SGKLGVVGFC FGGYASNMLA ARLPNVIDAA VPFYGTPPKD TYIKDIKAPI 240
  241 MLQFAQLDKR VNATWPAYEK ALKANKVDYQ AFIYEKTNHG FHNDSTGRYD EAQAELAWSR 300
  301 TLDFFKKHLS

Type	Start	End	Confidence
Cytoplasmic	1	47	0.81
Transmembrane Helix	48	66	0.80
Non-Cytoplasmic	67	310	0.96