YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86162035, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	520	0.89
Transmembrane Helix	521	542	0.90
Non-Cytoplasmic	543	556	0.81
Transmembrane Helix	557	575	0.89
Cytoplasmic	576	587	0.78
Transmembrane Helix	588	611	0.89
Non-Cytoplasmic	612	616	0.84
Transmembrane Helix	617	636	0.94
Cytoplasmic	637	643	0.86
Transmembrane Helix	644	663	0.93
Non-Cytoplasmic	664	671	0.73
Transmembrane Helix	672	693	0.90
Cytoplasmic	694	703	0.74
Transmembrane Helix	704	723	0.93
Non-Cytoplasmic	724	741	0.80
Transmembrane Helix	742	763	0.87
Cytoplasmic	764	768	0.79
Transmembrane Helix	769	788	0.89
Non-Cytoplasmic	789	797	0.70
Transmembrane Helix	798	817	0.90
Cytoplasmic	818	836	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METNMIPLGK IKEIASARGD KNALIFDGMK ISWNEYYKVV KNVTINLASK IDYSSEISMC  60
   61 YISPNCLELI YLMSAASSLK IPCTGIDYTQ NPSKLEPMLK SAGCKVLIIS SSYCIQNNVN 120
  121 LQELSSNLII IDIDNIAKNG ILFKDLTTPT EKNFESLTIQ HRAFKSISFT SGTSGIPKSV 180
  181 VRNKSFDARR FAFFTARYGF SSDDQHLLAM PLYHAAGSGW SRLFMQLGAT LIIAKPHDTK 240
  241 DMANLIKSEW ITTSAMTPPL LNDVVKHYQD EGYSPKDNNL KFIIVGGKHF HPQAKLQAIN 300
  301 TLGPVIHEYY GTTETGVNAL AEPKDLISNP TSVGRAYDGN NILVLDKEGK TLPPNQVGRI 360
  361 AIASYMNMDS YGNQDSESVL IEGEQYLVTA ETGEMDANGN IYLRNRAQGE SVLNVYELEN 420
  421 EVRHLPGIKD VAMIPASKNS VYCGFVTSDD FIVADNELIR NIKYICKKLK VKVAGIGHVD 480
  481 TIPYSPSGKI RNDQLKDMIL HKGQPNQATE KDSSDKKGIS FTQYIIGICC LLGTAMAWGG 540
  541 MFPVAKNALQ SMDAVHISLI RYGFASLIFM AMLATKEGIL SLLPGKHIFK LWMFGSFGFA 600
  601 GFSILAFAGL AYTKPQHGAI IMALMPLISA IMMWVLKNIK PAKFTLMSIA LALLGVVLVI 660
  661 TKGDINAFSG GSILPTLVIL SGAFCWVTYT IGASYVSDFS VLRYTALSCF LGALTILFIA 720
  721 FVTNATGITQ APDLQQIFAV KWELLYLITF AGVIAVFSWN YGINTLGPIN GILFINLVPI 780
  781 TAFTIGSLKG DLITQPEILG ATITISVLIM NNIYTRWSTT SKPAMAPQAF KLQMSR