YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86163792, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNQTQTSDR ASTKEQNAAY DNAPAPMTPF QEFWHYFSAN KGALAGFIFI VFICFMALFA  60
   61 DWIAPHTPSI QNRSALLLPP AWLEGGNWQY ILGTDDVGRD ILSRLMHGAR LSLSVGLVAV 120
  121 SASLVVGIFL GLIAGYNRGI IDTAIMRIVD IMLAMPSLLL AIAIVAVLGP SIVNAALAIS 180
  181 VVSLPHYVRL TRAATLAEMS KDYVTSSRVL GASPLRLMFV CVLPNCLAPL IVQATLGFSS 240
  241 AILDMAALGF LGLGAQPPIP EWGSMLADAL QFVQRAWWVV TFPGLMILIT VLAFNLMGDG 300
  301 LRDALDPKLK Q

Type	Start	End	Confidence
Cytoplasmic	1	41	0.61
Transmembrane Helix	42	64	0.89
Non-Cytoplasmic	65	112	0.59
Transmembrane Helix	113	136	0.90
Cytoplasmic	137	147	0.51
Transmembrane Helix	148	169	0.73
Non-Cytoplasmic	170	170	0.30
Transmembrane Helix	171	188	0.63
Cytoplasmic	189	220	0.54
Transmembrane Helix	221	255	0.71
Non-Cytoplasmic	256	275	0.60
Transmembrane Helix	276	298	0.90
Cytoplasmic	299	311	0.65